Saez Lab

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

saezlab

R package to infer biological activities from omics data using a collection of methods.

saezlab

R client for the OmniPath web service

saezlab

R package to access DoRothEA's regulons

saezlab

LIANA: a LIgand-receptor ANalysis frAmework

saezlab

CAusal Reasoning for Network Identification with integer VALue programming in R

saezlab

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

saezlab

Python package to perform enrichment analysis from omics data.

saezlab

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

saezlab

Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"

saezlab