methylation topic
dmrseq
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
deepsignal-plant
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
ELMER
Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target...
bioinf-commons
Bioinformatics library in Kotlin
defiant
Differential methylation: Easy, Fast, Identification and ANnoTation
wgbs_tools
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
MethylStar
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
wgbs-pipeline
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
bisulfite-seq-tools
Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing...