hi-c topic

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes

XiaoTaoWang

Extract 3D contacts (.pairs) from sequencing alignments

open2c

Python reimplementation of hicrep with compatibility for sparse matrices

cmdoret

Metagenomic binning based on Hi-C data

koszullab

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

zengxiaofei

Comparison of Hi-C Experiments using Structural Similarity.

vaquerizaslab

yezhengSTAT

Single-cell Hi-C data analysis toolbox

joachimwolff

A toolkit for analyzing architectural stripes

XiaoTaoWang

Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices

dozmorovlab