Open Chromosome Collective
Results
9
repositories owned by
Open Chromosome Collective
cooler
191
Stars
53
Forks
Watchers
A cool place to store your Hi-C
distiller-nf
81
Stars
25
Forks
Watchers
A modular Hi-C mapping pipeline
bioframe
163
Stars
26
Forks
Watchers
Genomic Interval Operations on Pandas DataFrames
coolpuppy
72
Stars
12
Forks
Watchers
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
pairtools
90
Stars
34
Forks
Watchers
flexible suite of CLI tools for contact extraction (.pairs) from sequencing data (Hi-C, Micro-C and other chromosome capture methods)
polychrom
43
Stars
17
Forks
Watchers
Chromosome polymer simulations and in silico capture experiments
quaich
21
Stars
6
Forks
Watchers
snakemake pipeline for Hi-C post-processing