chromatin topic

A collection of tools for Hi-C data analysis

mdozmorov

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like ma...

3DGenomes

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

tobiasrausch

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

mdozmorov

3D Genome Browser

3DGenomes

A Python implementation for BH-FDR and HiCCUPS

XiaoTaoWang

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

XiaoTaoWang

Chromosome polymer simulations and in silico capture experiments

open2c

CUT&RUN and CUT&Tag data processing and analysis

fl-yu

dcHiC: Differential compartment analysis for Hi-C datasets

ay-lab