cooler topic
cooler
A cool place to store your Hi-C
hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
docker-4dn-hic
Docker for 4DN Hi-C processing pipeline
hic2cool
Lightweight converter between hic and cool contact matrices.
HiCPeaks
A Python implementation for BH-FDR and HiCCUPS
HiC_pipeline
An easy-to-use Hi-C data processing software supporting distributed computation.
TADLib
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
StripeCaller
A toolkit for analyzing architectural stripes
hictk
Blazing fast toolkit to work with .hic and .cool files