hi-c topic
pairix
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
distiller-nf
A modular Hi-C mapping pipeline
HiC_data
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
pgltools
Paired Genomic Loci Tool Suite
adjclust
Adjacency-constrained hierarchical clustering of a similarity matrix
docker-4dn-hic
Docker for 4DN Hi-C processing pipeline
hic2cool
Lightweight converter between hic and cool contact matrices.
gcMapExplorer
Genome Contact Map Explorer - gcMapExplorer. Visit:
HiCPeaks
A Python implementation for BH-FDR and HiCCUPS
HiC_pipeline
An easy-to-use Hi-C data processing software supporting distributed computation.