genomic-data-analysis topic

List genomic-data-analysis repositories

plyranges

134
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19
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A grammar of genomic data transformation

selene

368
Stars
86
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a framework for training sequence-level deep learning networks

open-cravat

109
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26
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A modular annotation tool for genomic variants

helen

68
Stars
9
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H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

graphsim

22
Stars
7
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R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

gcMapExplorer

21
Stars
9
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Genome Contact Map Explorer - gcMapExplorer. Visit:

radiator

57
Stars
22
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RADseq Data Exploration, Manipulation and Visualization using R

stackr

26
Stars
8
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stackr: an R package to run stacks software pipeline

phigaro

46
Stars
15
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Phigaro is a scalable command-line tool for predicting phages and prophages

metacache

55
Stars
11
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memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping