transposable-elements topic

A tool for discovering transposable elements and describing patterns of genome evolution

sestaton

A toolkit for annotation of transposable element families from unassembled sequence reads

sestaton

Extensive de-novo TE Annotator

oushujun

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

hyunhwan-jeong

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

parklab

Earl Grey: A fully automated TE curation and annotation pipeline

TobyBaril

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is ve...

clemgoub

Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4

sjteresi

Annotation helper tool for the manual curation of transposable element consensus sequences

clemgoub

MCHelper: An automatic tool to curate transposable element libraries

GonzalezLab