genome-analysis topic

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

biocommons

Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)

pmenzel

non-redundant, compressed, journalled, file-based storage for biological sequences

biocommons

Fast Bayesian Hidden Markov Model with Wavelet Compression

wiedenhoeft

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al...

CMU-SAFARI

Long-reads Gap-free Chromosome-scale Assembler

ganlab

Using combined evidence from replicates to evaluate ChIP-seq peaks

Genometric

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

MAGICS-LAB

Bioinformatics on GCP, AWS or Azure

lynnlangit

BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applica...

CMU-SAFARI