GATB

compacted de Bruijn graph construction in low memory

GATB

Core library of the Genome Analysis Toolbox with de-Bruijn graph

GATB

DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.

GATB

k-mer counting software

GATB

GATB Minia assembly pipeline

GATB

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

GATB

Minia is a short-read assembler based on a de Bruijn graph

GATB

Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.

GATB