Algorithmic Bioinformatics Group @ University of Helsinki

Compacted and colored de Bruijn graph construction and querying

algbio

Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)

algbio

EMERALD calculates safety-windows by exploring the suboptimal alignment space

algbio

An accurate aligner of long reads to a variation graph, based on co-linear chaining

algbio