transcription-factor-binding topic

ChIP-seq analysis notes from Ming Tang

crazyhottommy

A repository with exploration into using transformers to predict DNA ↔ transcription factor binding

lucidrains

Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.

Danko-Lab

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

pinellolab

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

MAGICS-LAB

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

MiraldiLab

pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs

asntech