phylogenetics topic

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

biologyguy

FAVITES (FrAmework for VIral Transmission and Evolution Simulation)

niemasd

Bayesian Evolutionary Analysis by Sampling Trees

CompEvol

Bayesian Evolutionary Analysis Sampling Trees

beast-dev

RAxML Next Generation: faster, easier-to-use and more flexible

amkozlov

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCB...

etetoolkit

Official git repository for Biopython (originally converted from CVS)

biopython

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

edgardomortiz

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

stephaneguindon

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

NBISweden