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scanpy
1.8k
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Single-cell analysis in Python. Scales to >1M cells.
scvi-tools
1.1k
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342
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Deep probabilistic analysis of single-cell and spatial omics data
muon
200
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28
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muon is a multimodal omics Python framework
anndata
509
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148
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Annotated data.
ehrapy
129
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16
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Electronic Health Record Analysis with Python.
mudata
68
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16
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Multimodal Data (.h5mu) implementation for Python
scvi-tutorials
40
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24
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Notebooks used in scvi-tools tutorials
rapids_singlecell
93
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17
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Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
pertpy
87
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17
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Perturbation Analysis in the scverse ecosystem.