scverse topic
scanpy
Single-cell analysis in Python. Scales to >1M cells.
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
muon
muon is a multimodal omics Python framework
anndata
Annotated data.
ehrapy
Electronic Health Record Analysis with Python.
mudata
Multimodal Data (.h5mu) implementation for Python
scvi-tutorials
Notebooks used in scvi-tools tutorials
rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
pertpy
Perturbation Analysis in the scverse ecosystem.