modules
modules copied to clipboard
nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
A new module for the cram-size command of the samtools tool has been added.
### Is there an existing subworkflow for this? - [X] I have searched for the existing subworkflow ### Is there an open PR for this? - [X] I have searched...
## PR checklist Closes https://github.com/nf-core/modules/issues/2693 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
THIS TOOL IS NOT ON CONDA YET ## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug...
Implements unit testing and GitHub Actions with Podman. Migrates changes in PR #1706 for separate discussion. Note that Mamba has also been proposed as an alternative to Conda in PR...
## PR checklist Addresses first bullet from https://github.com/nf-core/viralrecon/issues/371 adds the subworkflow bam_trim_primers_ivar used in nf-core/viralrecon to nf-core/modules - [X] This comment contains a description of changes (with reason). - [X]...
## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
### Have you checked the docs? - [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug It seems that `tar.gz` outputs are decompressed automatically in...
Adds a new picard module that can be used for downsampling bam files ## PR checklist I think i've followed all the conventions - except maybe the required arguments recommendation....
## PR checklist Closes #XXX - [x] Added custom/shortenfastaids for https://github.com/nf-core/modules/pull/4984 - [x] If you've fixed a bug or added code that should be tested, add tests! - [x] If...