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nf-test Github actions decompress automatically tar.gz outputs when they should not

Open toniher opened this issue 1 year ago • 2 comments

Have you checked the docs?

Description of the bug

It seems that tar.gz outputs are decompressed automatically in Github actions (singularity, docker, conda) and it is then not possible to test if a file output is a compressed file. Details here: https://github.com/nf-core/modules/pull/5510

No problem on Gitpod instance.

Command used and terminal output

Github Action

Relevant files

.test files

System information

Github action

toniher avatar Apr 30 '24 21:04 toniher

For the sake of information, there seems to be a similar bug in Conda: https://github.com/conda/conda/issues/3798

toniher avatar May 09 '24 08:05 toniher

More understandable reference: https://github.com/nf-core/modules/pull/5510#issuecomment-2092342433

toniher avatar May 09 '24 09:05 toniher