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## WARNING - [ ] I have made sure to update the singularity and conda images This PR contains the following updates: | Package | Type | Update | Change...

renovate[bot]

Add prefix to output file for barrnap

2

## PR checklist Updates barrnap module to include prefix in the output filename. - [ ] This comment contains a description of changes (with reason). - [ ] If you've...

sofstam

ADD argNorm module

2

[argNorm](https://github.com/BigDataBiology/argNorm) is a tool to normalize antibiotic resistance genes (ARGs) by mapping them to the [antibiotic resistance ontology (ARO)](https://obofoundry.org/ontology/aro.html) created by the [CARD database](https://card.mcmaster.ca/). argNorm also enhances antibiotic resistance gene...

Vedanth-Ramji

Arity POC

2

IMO the only thing stopping this for now is the inability for Nextflow to handle arity in optional inputs/outputs. I made an issue about this: https://github.com/nextflow-io/nextflow/issues/5111

nvnieuwk

Updating the JSON schema used to lint modules meta.yml files according to the changes which will be introduced by https://github.com/nf-core/tools/pull/3028

mirpedrol

POC for https://github.com/nf-core/tools/pull/3028 and https://github.com/nf-core/tools/pull/3032 Run `nf-core modules lint --fix` for modules: - `fastp` - `samtools/sort` - `samtools/index` - `atlas/splitmerge` - `pear` - `multiqc` - `bwa/mem` Note that linting won't...

mirpedrol

This PR adds a `multiqc` output channel to the `last/train`, `last/lastal` and `last/split` modules. The new channel provides statistics in TSV format. For `last/lastal` the MultiQC file contains some of...

charles-plessy

Handle empty files

11

This PR fixes #5612 This PR also handles empty FASTQ files by including a empty fastq emit channel

k1sauce

fix-5612 / s3 cloud-storage compatibility

1

## PR checklist Closes #5612 To address issue #5612, the following changes have been made to ensure compatibility with cloud storage like S3: - **File Path Creation:** Replaced the Java...

glichtenstein

### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...

cduong11