Mathias Goncalves
Mathias Goncalves
Sounds like a good idea, one suggestion would be to have the main repository (this one?) consist of only the statistical material and then include the R/Python companions as git...
unfortunately this still [isn't fully supported](https://www.mail-archive.com/[email protected]/msg05688.html) - my runs are also missing `...HIGHRES_transformed.surf.gii` I'll test this with `v3.26.1` and if things look good, update the dockerfile
@tsalo are you referring to [this function](https://github.com/PennLINC/xcp_d/blob/1d7bce24ae70f955d64641afbb75226267c3fd27/xcp_d/utils/utils.py#L286)? Looks interesting and reasonable to add
Do you see any error messages in the log? And you may have better luck with the [latest development release](https://github.com/nipreps/nibabies/releases/tag/24.0.0a1)
Could not replicate, please reopen if still running into issues
AFAIK, there hasn't been any updates to `infant_recon_all` - I haven't inspected the log in awhile but it's possible the seed used is logged there, perhaps @lillazollei may know
This should implement a single label volume in MNI152 space.
well, the reason they're not displaying is we have an explicit catch in the configuration 😄 : https://github.com/nipreps/nibabies/blob/653491eea1df20490effa3342550e5f464ad6073/nibabies/config.py#L92-L103 Good catch as I had forgotten about this - IIRC, this originated...
Yep I prefer 1, sprinkling in `warnings.filterwarnings` when needed
This will require adding MCRIBS segmentation