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FEAT: Save CIFTI subcortical volumes
Address #251
- My preference remains only outputting the CIFTI, and allowing users to derive this with
wb_command -cifti-separate <input-cifti> COLUMN -volume-all <output-file>
- This will increase output size, as another copy of the BOLD series will now be present.
- Perhaps we want to output a mask + xfm that can be applied instead (and fits better with the fit/apply approach we are moving towards)
Note: The ROI is not guaranteed to be in LAS orientation, as the reorienting happens directly in the dtseries creation workflow