Mathias Goncalves
Mathias Goncalves
This may be the culprit - https://github.com/nipy/nipype/issues/3526
@gladomat these -v 7.3 files are not implemented in `scipy`'s reader yet - however we should be able to read them in with `h5py`. The spm offenders within nipype seem...
yes, essentially two try/except blocks (one for importing `h5py`, one for using `h5py.File()`) - if you have any problems I can help out/implement it down the line
@satra @oesteban has this been solved or should we merge this? related to #1427
This is causing an error upstream: ``` Traceback (most recent call last): File "/opt/conda/envs/nibabies/bin/nibabies", line 8, in sys.exit(main()) ^^^^^^ File "/opt/conda/envs/nibabies/lib/python3.11/site-packages/nibabies/cli/run.py", line 61, in main retval = build_workflow(config_file) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File...
Removing or replacing both sound reasonable - it's just the sanitized id needs to be available within the `FieldmapEstimation` class so we can easily index the workflow inputs.
No they are not - though if we had access to the DICOMs, we could try converting with the latest dcm2niix
@mirestrepo [here is the Dockerfile](https://github.com/ReproNim/reproin/blob/a78524a578aabd8ed44cb32d89358b0b8b871ab1/dcmrecv/Dockerfile) for the image
I believe this was prepared for use in northeastern's imaging center, but @satra would know if was actually implemented. If not, I'm fine with this being a starter point for...
agreed - it will also simplify testing