Mathias Goncalves

Extra curly brace in version 0.4

3

### Command ``` doi2bib https://doi.org/10.1016/j.neuroimage.2010.07.033 ``` ### Output ``` @article{Fonov_2011, doi = {10.1016/j.neuroimage.2010.07.033}, url = {https://doi.org/10.1016%2Fj.neuroimage.2010.07.033}, year = 2011, month = {jan}, publisher = {Elsevier {BV}}, volume = {54}, number...

This adds `migas` telemetry in addition to sentry, to allow us to compare +/-'s

Improve cryptic error when `dataset_description.json` is missing

2

### Steps to reproduce 1. Create a `BIDSLayout(..., validate=False)` on a BIDS directory without a `dataset_description.json` 1. Do any `get` query with `scope` set to anything but `"all"`. ``` ---->...

FIX: Lingering temporary directories

2

This is a spin-off of #466 and a continuation of #485 After first confirming the problem with a failing test, this PR: - Removes custom temporary directory object from various...

When setting a key to `outtype=('nii',)`, heudiconv executes successfully but produces invalid data. A workaround is to use the `--dcmconfig` flag with the following config option: ``` { "compress": "n"...

MAINT: Drop Python 2 support

1

- [x] Remove from testing - [ ] Clean up hacks - [ ] https://github.com/nipy/heudiconv/blob/2b9319d9d84e0f647fae28b4a83b75268ce8e64c/heudiconv/utils.py#L153 - [ ] https://github.com/nipy/heudiconv/blob/2b9319d9d84e0f647fae28b4a83b75268ce8e64c/setup.py#L23 - [ ] https://github.com/nipy/heudiconv/blob/2b9319d9d84e0f647fae28b4a83b75268ce8e64c/heudiconv/convert.py#L74 - [ ] https://github.com/nipy/heudiconv/blob/b3977072f36e71ea0af6484f125cbf561d3f0787/heudiconv/dicoms.py#L417

curate dcmstack extracted metadata

1

Unsure if this is a problem with the scanner / protocol / extraction, but we should ensure `heudiconv` output does not produce illegal JSON related issue - https://neurostars.org/t/error-with-node-split-using-fmriprep-distortion-correction-with-fieldmap-data/6039

reduce sidecar size by default

1

Essentially mimic use of the `--minmeta` flag, but allow users the option to extract more/all DICOM metadata (`--all-meta`?). This will greatly reduce conversion output directory sizes by default, especially for...

heudiconv extensions

3

Idea brought from #381 - allow the use of extensions to do additional processing during conversions

enh: add support for PAR/REC files

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[original thread](https://neurostars.org/t/converting-philips-par-rec-files-with-heudiconv/1099) on neurostars. Since Dcm2niix already supports this, we would need to add either a PAR/REC flag or try/except blocks to avoid DICOM operations EDIT: perhaps we can use...