Mathias Goncalves
Mathias Goncalves
It would be interesting to see the computational requirements of `DenoiseImage` across data with varying levels of noise. If it is fairly fixed, perhaps adding a `--denoise` option may be...
@oesteban what did you mean by > sidecar json of surfaces
Do those JSONs currently exist? I'm not seeing them in my `fmriprep/` outputs...
is there any information in the log file produced by freesurfer? (found in `//scripts/recon-all.log`)
Ok, looking at the log a little closer, autorecon1 instantly fails: ``` [Node] Executing "autorecon1" 220528-11:48:40,992 nipype.workflow INFO: [Node] Finished "autorecon1", elapsed time 0.77419s. ``` Perhaps the best way to...
If you keep all the options you previously used, and add in `--shell`, you should then be dropped in to an interactive session on the terminal. If the working directory...
Thank you @smeisler for tracking that down!
+1 to moving to RTD, though I vaguely remember trying this (or maybe it was for niworkflows) and something not working out cc @oesteban
+1 to adding some surface visualization to the reports, especially after poldracklab/fmriprep#2145