Mathias Goncalves
Mathias Goncalves
The problem lies within [sdcflow's `init_syn_preprocessing_wf` using an adult B0 image as a prior, and warping it to `MNI152NLin2009cAsym`](https://github.com/nipreps/sdcflows/blob/82f419bc398e96135729aad5a84ada798de81635/sdcflows/workflows/fit/syn.py#L438-L447). For infants, a few ideas, from easier to harder - Drop...
@xxnagit would you mind testing this patch to verify it fixes your issue? https://github.com/nipreps/nibabies/wiki/Testing
sure, you can use `nipreps/nibabies:derivatives-no-preproc`
@xxnagit can you clarify - are the bibsnet outputs a different orientation than the input data?
nope, looks like building the image is the problem - cc @effigies @djarecka
Thank you for this - took a quick glance at https://github.com/gagnonanthony/tpl-UNCBCP4DInfant and things look great. Will give it a more thorough review next week
Hi @gagnonanthony - these look awesome, and can see them being super useful for https://github.com/nipreps/nibabies. We welcome any contributions - if you would like to give it a go here...
Can you share the output log and the contents of the filter file you are using? Also looks like your line break on `--derivatives` is not properly spaced. FYI -...
Were any T2w images found? I don't think `--bids-filter-file` will filter metadata, only bids entities directly in the filename.
You'll have to use the full entity name - `acquisition`