Mathias Goncalves

There are a few moving parts here, can you clarify the following? 1. What does your bids directory tree look like for the subject you are running? 2. What does...

RE: filter - Which file are you trying to isolate? I don't see anything matching your T2w criteria...you are looking for: `anat/sub-_ses-V02_run-2_T2w...` RE: the validation failure, I'm not quite sure...

`--bids-filter` is inclusive, so only the subsequent matches will be used. It seems like you are looking to use it to exclude - this behavior is not implemented. Your best...

I tested this, and can confirm our data collection already filters based on JSON sidecars as well as filename entities. I just added #452 to improve the transparency of which...

Picked Ross's brain about it earlier - it's a node error, likely from either a really large JSON or TSV. @bilas003 it would be nice to verify the BIDS directory...

has this been resolved?

Thanks for the report - likely it's due to N4 altering the T2w's header enough to cause this mismatch. To patch this, we should preserve the original header information.

looks like a race condition when copying fsaverage to the freesurfer output directory - if you run a single process and let it complete, future runs shouldn't have a problem

@JohannesWiesner if you are running fmriprep as a single process across subjects, it is protected. however, if multiple processes are running independently, this introduces some complexity (lock files, handling stale...