Mathias Goncalves
Mathias Goncalves
If `fieldcoeff_file` can always be created, just adding `default=True` should suffice. If not, then this is intended behavior, as I don't believe interfaces' outputs can be dependent on workflow connections...
> By "can always be created" you mean can be created by an interface with only the mandatory inputs set? Yes, that's a better way to say it :+1: >...
@mwaskom is this all set?
@josef-pkt In my case, I'm taking the difference of coordinates within 3D brain images for pre-post treatment, and then conducting a t-test to see if each value in the array...
@josef-pkt Thanks for the reply, I believe scipy's ttest_1samp (what I'm using) returns nans for 0/0 zero variance. The nan data is likely blank space outside the brains for both...
@josef-pkt `pval_corrected[mask] = multipletests(p[mask],method='fdr_bh')[1]` did the trick, and assigned values to select nans in `pval_corrected`. Thanks again!
It looks like MCRIBS is failing when dividing the brain by segmentation labels - have you verified visually inspected the segmentations you are using? MCRIBS uses DrawEM labels, rather than...
@mblesac not sure if you figured this out, but if you would be willing to share some data I could take a closer look
Hi @pollaro - what's the frequency of failures in the dataset, and how good would you say are the quality of the segmentations? Based off our tests when evaluating the...
thanks for following up!