Mathias Goncalves

IMO, the output spaces syntax is already quite complicated, so I'm a bit hesitant to add another special value (`auto`). I like using `MNIInfant`, though some some changes to the...

Dropped the ball on responding here, my bad >--output-spaces MNIInfant:cohort-1:cohort-auto MNI152NLin6Asym is clearer than --output-spaces MNIInfant MNIInfant:cohort-1 MNI152NLin6Asym "MNIInfant:cohort-auto" will only be added if no MNIInfant output spaces are present...

Since we support having either the T1w or T2w as the reference template, it's a bit trickier. ATM, the T1w/T2w labels are helpful when ingesting incoming precomputed derivatives, such as...

Ah, guess I also misread your suggestion - adding `space-anat` in addition to `space-T1w` and `space-T2w` as a convenience for the anatomical template would be nice. Is the idea to...

I know it is not BIDS compliant, but this seems like a good argument for supporting the `+` character as a cohort extension to greatly simplify naming. ``` dhcpAsym+42, MNIInfant+1...

Removing https://github.com/nipreps/niworkflows/blob/master/niworkflows/tests/data/testSpatialNormalizationRPTMovingWarpedImage.nii.gz might help...

Also tested on a mac, and seeing a different issue with multiprocessing ``` 240620-07:50:10,370 cli IMPORTANT: Running MRIQC version 0.16.0: * BIDS dataset path: /var/folders/r6/mcdps6rs37x2ttd1fn032yy40000gp/T/repro-AaUAJmz/ds000003-qc/sourcedata. * Output folder: /var/folders/r6/mcdps6rs37x2ttd1fn032yy40000gp/T/repro-AaUAJmz/ds000003-qc. *...

You are right, it is missing from the container! Will need to add it to the [conda environment](https://github.com/nipreps/nibabies/blob/master/env.yml)

What does your log look like when running? I just tested this out locally using BIDS URI and pepolar correction was applied.

Should be fixed after https://github.com/nipreps/nibabies/commit/2b8fb251558f5807603963058ff2aa8ff0201725