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Hail on Spark 3.2

2

Hey, I was wondering when Hail will be on Spark 3.2?

williambrandler

hl.Table.to_pandas() generates a dtype=string dataframe which is still experimental

1

I encountered an error in an external package when I used a Hail-generated pandas data frame, which is due to an unsupported dtype [`pandas.StringDtype`](https://pandas.pydata.org/docs/reference/api/pandas.StringDtype.html#pandas.StringDtype). https://github.com/biocore-ntnu/pyranges/pull/264 Given it's still experimental in...

mkanai

geom_boxplot

2

Added a geom to support boxplots.

ammekk

to replicate: ``` mt = hl.balding_nichols_model(10, 10, 10) hl.export_plink(mt.key_cols_by(s=hl.str(mt.sample_idx)), '/tmp/foo') ``` then manually edit bim file to look like: ``` 1 1:1:A:C 0.0 1 C A 1 1:2:A:C 0.0 2...

tpoterba

[ci,gateway,internal-gateway] Move gateways from nginx to envoy

4

This is a multi-stage overhaul of our Kubernetes load balancers / service discovery. This involves moving off of NGINX onto Envoy, but more importantly involves better control of what namespaces...

daniel-goldstein

[batch] Open Batches!

8

Based off of #12154. Stacked on #12193.

jigold

[ggplot] add shape aesthetic support to point geom

1

Currently, `geom_point` does not support specifying a point shape via an aesthetic. This change adds support for a `shape` aesthetic to `geom_point`. For example, using the following set of commands...

iris-garden

[batch] Use a simulated job queue to estimate the ready cores in the control loop

1

I added a new Grafana panel without alerts that hopefully will let us catch problems if jobs aren't getting scheduled in a timely manner. I think to have an alert,...

jigold

tpoterba

Adds functionality for CI to track which namespaces in the cluster are currently active and which services they are running. See #12095 for more context on the motivation for this...

daniel-goldstein