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Cloud-native genomic dataframes and batch computing
Moves multi-pod deployments over to using Headless Services, which enables client-side load-balancing to the underlying pods. See #12095 for more context. The reason I put this in its own PR...
Stacked on #12210, this alters `build.py` to push images to `docker_prefix` and to `new_docker_prefix` if present in the global config. This will make sure that when we switch `docker_prefix` to...
The search bar for the batch docs is broken and just says `Searching…` forever. Tracked it down to a bug in the `sphinx_rtd_theme` dependency that was fixed in a later...
This enables Query-on-Batch pipelines to read from requester pays buckets. @tpoterba curious for your thoughts on the flag situation. I suspect this PR will induce the Australians to start including...
Bumps [nest-asyncio](https://github.com/erdewit/nest_asyncio) from 1.5.4 to 1.5.5. Commits 3cfd2c8 Potential fix for issue #65 616d9a5 Patch asyncio.get_event_loop to not require a running loop, fixes #70 See full diff in compare view...
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Bumps [flask](https://github.com/pallets/flask) from 2.0.3 to 2.2.2. Release notes Sourced from flask's releases. 2.2.2 This is a fix release for the 2.2.0 feature release. Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-1 Milestone: https://github.com/pallets/flask/milestone/25?closed=1 2.2.1 This is...
Adding this function in to provide flexibility for impute sex ploidy in circumstances where the entries of the coverage MT doesn't change, but we want to subset the intervals used.
An attempt to break open batches into a bunch of smaller PRs
Bumps [debugpy](https://github.com/microsoft/debugpy) from 1.6.0 to 1.6.3. Release notes Sourced from debugpy's releases. debugpy v1.6.3 Fixes: #869, #973, #987, #995, #1008 Improvements: #951, #1001 debugpy v1.6.2 Fixes unintentional breaking change in...