hail icon indicating copy to clipboard operation
hail copied to clipboard

Cloud-native genomic dataframes and batch computing

Results 235 hail issues
Sort by recently updated
recently updated
newest added

Currently, the Hail datasets API only has the pan-UKB datasets available via the Amazon S3 bucket. This PR makes the pan-UKB datasets available via GCS as well (from the `gs://ukb-diverse-pops-public`...

Error message was this: ``` + kubectl -n pr-12053-default-chqnmsebv8fq scale deployment batch-driver --replicas=0 Error from server (Forbidden): deployments.apps "batch-driver" is forbidden: User "system:serviceaccount:pr-12053-default-chqnmsebv8fq:admin" cannot get resource "deployments" in API group...

Bumps [avro](https://github.com/apache/avro) from 1.11.0 to 1.11.1. Commits See full diff in compare view [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=avro&package-manager=pip&previous-version=1.11.0&new-version=1.11.1)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter...

dependencies
python

## Bug fixes to enable Azure deployment Most of these bugs were discovered in deploying the MySQL server from scratch, specifically deploying version 8.0. Some were encountered when we hit...

CHANGELOG: Add `rand_int32` and `rand_int64` for generating random 32-bit and 64-bit integers, respectively.

Bumps [mistune](https://github.com/lepture/mistune) from 0.8.4 to 2.0.4. Release notes Sourced from mistune's releases. Version 2.0.2 Fix escape_url via lepture/mistune#295 Version 2.0.1 Fix XSS for image link syntax. Version 2.0.0 First release...

dependencies
python

CHANGELOG: `hl.balding_nichols_model` now supports an optional boolean parameter, `phased`, to control the phasedness of the generated genotypes. This will fail until https://github.com/hail-is/hail/pull/12060 merges.

I'm not sure if adding the `--force-delete` option will help delete the VMs that are not getting cleaned up, but it's worth a shot. https://docs.microsoft.com/en-us/cli/azure/vm?view=azure-cli-latest#az-vm-delete