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Cloud-native genomic dataframes and batch computing
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Added tutorial for make_children, make_parents, and the various relatedness tests
### Description In this pull request, I add a function to perform a Cochran-Mantel-Haenszel statistical test for association. This pull request closes #13481. ### Testing I add unit tests. Since...
### Description In this pull request, I implement the PC-AiR method as described in this [paper](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836868/). This includes the PC-AiR algorithm for partitioning samples into an unrelated set and a...
This will allow expert users to import these functions directly and use them in, for example, grouped aggregators. ```python3 from hail.vds.sample_qc import vmt_sample_qc, vmt_sample_qc_variant_annotations vmt = vds.variant_data vmt = vmt.annotate_entries(GT=hl.vds.lgt_to_gt(vmt.LGT,...
First draft of a helm chart for packaging up Hail Batch as a Terra on Azure App. This will likely need numerous bug fixes as we set up a proper...
Fixes #13191 and replaces #13192. See discussion there. I decided the `mentioned` checks in the tests weren't very useful and I'm not sure what the intent was there. We have...
