M Bernt

Autoupdate: start a separate instance for each workflow

2

An attempt to solve the problem that the workflow autoupdate does not update all workflows in a dir. I think the problem occurs if the tool set of the workflows...

Questions for use in a Galaxy tool wrapper

4

I'm currently working on an integration of virsorter in the Galaxy platform and had a few questions: - For the Galaxy tool wrappers we need to define tests. Is there...

Having a meaningful exit code makes this much more usable in automatization (fixes https://github.com/galaxyproject/ephemeris/issues/217). - Also add a `- add --log_level` argument. - Cleanup logging code - `ProgressConsoleHandler` seemed to...

Output contains lines ``` * Error installing a repository ``` but exit code is still `0`.

``` Traceback (most recent call last): File "/home/songalax/.venv-ephemeris/bin/shed-tools", line 8, in sys.exit(main()) File "/home/songalax/.venv-ephemeris/lib64/python3.9/site-packages/ephemeris/shed_tools.py", line 681, in main log = setup_global_logger(name=__name__, log_file=args.log_file) AttributeError: 'Namespace' object has no attribute 'log_file' ```...

i.e. add `concurrency` to workflows

Dataset chooser does not show tags anymore

2

**Describe the bug** This worked until recently (except for choosing multiple datasets). But this might be intended, becuase datasets might have many tags which would be nasty fur UI. Just...

Fix handling of v2 hashes

1

Added tests first for the mulled container resolvers here https://github.com/galaxyproject/galaxy/pull/18522/commits/5b3c4bddd38d88bd195176be9f20f3e81d5336df Then fixed (and more tests) here: https://github.com/galaxyproject/galaxy/pull/18522/commits/e7bca837f08345980f240f633921dbcce174345e See details in https://github.com/galaxyproject/galaxy/pull/18522/commits/e7bca837f08345980f240f633921dbcce174345e I'm tempted to backport this to 24.1 in order...