M Bernt

Autoupdate: start a separate instance for each workflow

2

An attempt to solve the problem that the workflow autoupdate does not update all workflows in a dir. I think the problem occurs if the tool set of the workflows...

Questions for use in a Galaxy tool wrapper

4

I'm currently working on an integration of virsorter in the Galaxy platform and had a few questions: - For the Galaxy tool wrappers we need to define tests. Is there...

Having a meaningful exit code makes this much more usable in automatization (fixes https://github.com/galaxyproject/ephemeris/issues/217). - Also add a `- add --log_level` argument. - Cleanup logging code - `ProgressConsoleHandler` seemed to...

Output contains lines ``` * Error installing a repository ``` but exit code is still `0`.

``` Traceback (most recent call last): File "/home/songalax/.venv-ephemeris/bin/shed-tools", line 8, in sys.exit(main()) File "/home/songalax/.venv-ephemeris/lib64/python3.9/site-packages/ephemeris/shed_tools.py", line 681, in main log = setup_global_logger(name=__name__, log_file=args.log_file) AttributeError: 'Namespace' object has no attribute 'log_file' ```...

i.e. add `concurrency` to workflows