protein-structure topic

List protein-structure repositories

biopandas

691
Stars
117
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Working with molecular structures in pandas DataFrames

verified publisher icon BioPandas

gemmi

200
Stars
39
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macromolecular crystallography library and utilities

verified publisher icon project-gemmi

biojava

581
Stars
379
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:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

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hh-suite

507
Stars
128
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Remote protein homology detection suite.

verified publisher icon soedinglab

plip

412
Stars
98
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Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

verified publisher icon pharmai

pypdb

300
Stars
77
Forks
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A Python API for the RCSB Protein Data Bank (PDB)

verified publisher icon williamgilpin

MolecularNodes

809
Stars
81
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Toolbox for molecular animations in Blender, powered by Geometry Nodes.

verified publisher icon BradyAJohnston

biopython

4.2k
Stars
1.7k
Forks
172
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Official git repository for Biopython (originally converted from CVS)

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graphein

990
Stars
125
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Protein Graph Library

verified publisher icon a-r-j

tape

634
Stars
130
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Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

verified publisher icon songlab-cal