k-mers topic

Indexing & querying large assembly graphs -- in space, no one can hear you miao!

spacegraphcats

A method for variant graph genotyping based on exact alignment of k-mers

bioinformatics-centre

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

bingmann

Phage-Host Interaction Search Tool

refresh-bio

Fast and compact locality-preserving minimal perfect hashing for k-mer sets.

jermp

counts k-mers, written in rust

suchapalaver

Accurate, resource-frugal and deterministic DNA sequence classifier.

prophyle

Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

karel-brinda

Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)

algbio

High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers

liaoherui