sequence-alignment topic

A collection of publications on comparison of high-throughput sequencing technologies.

Nazeeefa

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Martinsos

:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

biojava

Bidirectionally transformed strings

microsoft

Official git repository for Biopython (originally converted from CVS)

biopython

A versatile pairwise aligner for genomic and spliced nucleotide sequences

lh3

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

lh3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

seqan

Accelerated BLAST compatible local sequence aligner.

bbuchfink

The next version of bwa-mem

bwa-mem2