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spades-core finished abnormally, err code: 4

6

### Description of bug Dear spades team, * system call for: "['/home/users/ddu/anaconda3/pkgs/cloudspades-3.12.0-0/bin/spades-core', '/home/users/ddu/projects/009.RA/002.linked-reads/Assembly/Script/Cloudspades_HP1/K77/configs/config.info']" finished abnormally, err code: -8 Best, Du ### spades.log [spades.log.zip](https://github.com/ablab/spades/files/10068202/spades.log.zip) ### params.txt [params.txt.zip](https://github.com/ablab/spades/files/10068211/params.txt.zip) ### SPAdes version cloudspades-3.12.0...

GeorgeBGM

metaSPADES stucked

3

### Description of bug I am running metaSPADES on a sample of ~60 Gb. I'd like to use this assembler, because it provides better results. Here, you find some info...

marco91sol

Spades errors while trying to assemble low coverage genomes

2

### Description of bug I am trying to assemble several low coverage spider genomes (2X-10X) with Spades using the following command: spades.py -1 ../File_1_paired.fq.gz -2 ../File_2_paired.fq.gz -t 20 -k 21,41,61,81,101,121...

SilAdSe

Avoid expr substr in spades_compile.sh

2

`expr substr` is not defined in posix and not implemented in MacOS /bin/expr. The much simpler bash substring expansion should be more widely compatible. It does work with MacOS' ancient...

epruesse

### Description of bug Dear Spades Team, I have some problems with spades and would like to ask for help, thank you enough. ######### == Error == system call for:...

yxllee

broken after five-day running

1

### Description of bug Dear spades team, I tried at least three times on the same sample, but with same error each time, basically stopped at the same step ---...

B1991ing

spades-core: /opt/conda/conda-bld/spades_1664217775513/work/src/project/spades/main.cpp:101: int main(int, char**): Assertion `cfg::get().K >= runtime_k::MIN_K && cfg::get().K < runtime_k::MAX_K' failed.finished abnormally, OS return value: -6

2

### Description of bug OS return value: -6 after the use of K149 but it's working for K55. ### spades.log [spades.log](https://github.com/ablab/spades/files/15149007/spades.log) ### params.txt [params.txt](https://github.com/ablab/spades/files/15149017/params.txt) ### SPAdes version SPAdes 3.15. ###...

GuillaumeDore11

== Error == finished abnormally, OS return value: -11

5

### Description of bug I'm keep getting this OS return value: -11 error. Does anyone can help? ### spades.log [spades.log.gz](https://github.com/ablab/spades/files/14996270/spades.log.gz) [spades_test.log.gz](https://github.com/ablab/spades/files/14996292/spades_test.log.gz) ### params.txt [params.txt.gz](https://github.com/ablab/spades/files/14996273/params.txt.gz) [params_test.txt.gz](https://github.com/ablab/spades/files/14996276/params_test.txt.gz) ### SPAdes version SPAdes_v3.15.5 ###...

efe3506

Test dataset does not work, spades-hammer fails

2

### Description of bug I have an error on Spades 3.15.5 downloaded and installed as Binary from here (GitHub Releases). It is the same issue as reported in #1267. Unfortunately,...

Pigrenok