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ablab
SPAdes Genome Assembler
### Description of bug I'm using spades with the --meta option. I set 1000 GB for the RAM use ### spades.log [spades_file.log](https://github.com/ablab/spades/files/10831872/spades_file.log) ### params.txt [params.txt](https://github.com/ablab/spades/files/10831873/params.txt) ### SPAdes version 3.15.5 ###...
### Description of bug Hello, I am attempting to do read error correction on a set of paired end reads but I keep getting OS return value: -4. I don't...
### Description of bug I ran metaviralspades on an isolate phage library and noticed one of the samples contains the exact same genome 2x in the output file, but with...
### Description of bug When I run with `--memory 110` (roughly as per the cluster's specs; see below) I get the message `terminate called without an active exception` and `finished...
### Description of bug From trying to download with wget on a mac and remotely (linux) getting the following error: get: unable to resolve host address ‘cab.spbu.ru’ ### spades.log not...
### Description of bug there are the title line of scaffolds.fasta produce by SPAdes 3.15.5 with --metaviral. The last two sequences were duplicated. >NODE_1_length_52915_cov_2931.632379_cutoff_0_type_circular >NODE_2_length_4936_cov_363.953421_cutoff_0_type_circular >NODE_1_length_148899_cov_7.069247_cutoff_5_type_linears >NODE_1_length_52991_cov_2927.538344_cutoff_54_type_linearrepeat >NODE_1_length_52991_cov_2927.538344_cutoff_70_type_linearrepeat By the...
### Description of bug Hi Spades' developers, I get the below error message ending the spades.py running: * system call for: "['/home/mario/SPAdes-3.15.5-Linux/bin/spades-core', '/home/mario/JuanCarlos_UCM/spades-all_bact/K21/configs/config.info', '/home/mario/JuanCarlos_UCM/spades-all_bact/K21/configs/careful_mode.info']" finished abnormally, OS return value: -11....
### Description of bug Hello, I ran the spades test file [ spades.py --test ] to confirm that it is working properly. However, I see a couple of issues in...
### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. Hi, I have illumina Novoseq data with 250bp...
### Description of bug Thank you for your work on this incredible software. I have enjoyed SPAdes for many years. I am hoping you can help me resolve an error...
