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ablab
SPAdes Genome Assembler
### Description of bug Hello, I'm running a Nanopore + Illumina hybrid assembly and I seem to be getting similar error some people have encountered with v3.12 (#43 ) even...
### Description of bug Hi, I know what it means, mmap can not allocate sufficient memory for the next step. But how much memory does it need? and why? ```bash...
### Description of bug Dear author, thank you for developing such excellent software, which helps us a lot in genome assembly. Now I have a problem with SPAdes automatically setting...
distutils is deprecated and its use triggers DeprecationWarning which make some Ubuntu autopkgtests fail: fix this by replacing distutils by equivalent functions. distutils.version is simply replaced with packaging.version. distutils.copy_tree is...
Hi, Just wondering if it is normal for some samples to fail at producing output files such as contigs.fasta with metaspades? Out of 180 samples, 5 of them continue to...
Hello, I am using spades v3.14 in `--meta` mode. I got an error, these are the last lines in the log file: ``` 2:34:39.146 46G / 105G INFO StageManager (stage.cpp...
### Description of bug Hi, I am trying to run coronaSPAdes on a sample we are interested in. Initially I had only Illumina single-end reads available. The original FASTQ was...
### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. We need to determine the set of `include`...
### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. Document the SPAdes build process from the developer...
I'm assembling Illumina paired reads for Ecoli using spades v. 3.13. The assembly program finishes with warnings. Below is the command I used: /usr/local/packages/spades-3.13.0/bin/spades.py -o Ecoli_allRIPTIDE_SPAdes_assembly --dataset Ecoli_readsets.yaml -m 400...
