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== Error == system call for: "['/usr/lib/spades/bin/spades-core', '/home/ifb/rnaSPAdemount/K55/configs/config.info', '/home/ifb/rnaSPAdemount/K55/configs/mda_mode.info', '/home/ifb/rnaSPAdemount/K55/configs/rna_mode.info']" finished abnormally, err code: -6

1

### Description of bug == Error == system call for: "['/usr/lib/spades/bin/spades-core', '/home/ifb/rnaSPAdemount/K55/configs/config.info', '/home/ifb/rnaSPAdemount/K55/configs/mda_mode.info', '/home/ifb/rnaSPAdemount/K55/configs/rna_mode.info']" finished abnormally, err code: -6 ### spades.log [spades.log](https://github.com/ablab/spades/files/14715880/spades.log) ### params.txt [params.txt](https://github.com/ablab/spades/files/14715892/params.txt) ### SPAdes version SPAdes 3.13.1...

adsas45

Error value:-9 None

3

### Description of bug I get the -9 error. ### spades.log [spades.log](https://github.com/ablab/spades/files/14653543/spades.log) ### params.txt [params.txt](https://github.com/ablab/spades/files/14653537/params.txt) ### SPAdes version SPAdes 13.15.5 ### Operating System mac OS Sonoma 14.3.1 ### Python Version...

Marysabl

* system call for: "['/usr/lib/spades/bin/spades-core', '/home/bilsab/esra/tabenoids/FastUniq/source/combined_spades_output_4/K33/configs/config.info']" finished abnormally, err code: -9

1

### Description of bug === ERRORs: * system call for: "['/usr/lib/spades/bin/spades-core', '/home/bilsab/esra/tabenoids/FastUniq/source/combined_spades_output_4/K33/configs/config.info']" finished abnormally, err code: -9 ### spades.log [spades.log](https://github.com/ablab/spades/files/14613770/spades.log) ### params.txt [params.txt](https://github.com/ablab/spades/files/14613774/params.txt) ### SPAdes version v3.13.1 ### Operating System...

esbusis

Out of Memory Issue

3

### Description of bug I am trying to run meta-spades on a virome sample. I found that after showing the `mimalloc: warning: unable to allocate from region: size 4194304`, the...

magcurly

Error == system call for: ....." finished abnormally, OS return value: -6 None when running rnaspades

1

### Description of bug I get this: ``` Verification of expression 'stream_.good()' failed in function 'void io::BinaryFileStream::Init() [with SeqT = io::SingleReadSeq]'. In file '/opt/conda/conda-bld/spades_1664217775513/work/src/common/io/reads/binary_streams.hpp' on line 37. Message 'Stream is...

komorn

finished abnormally, OS return value: -11 and source code intasll error

8

### Description of bug Dear Spades Team,, Thanks for your spades. I encountered an error when using spades: finished abnormally, OS return value: -11. I used defult paremters and spades...

2110537

getting error while running spades.py error : finished abnormally, OS return value: -11

6

### Description of bug I am running the following command "spades.py --rna -s mouse1_mRNA.fastq -o mouse1_spades -m 50 --phred-offset 33" getting error like this == Error == system call for:...

rishidash12

Exception caught Cannot open file XXX/.bin_reads/paired_0.off': iostream error

4

### Description of bug Hi, Our server has 512 GB of RAM and 256 cores. I have an issue shown in the spades.log. If I run spades with root privileges,...

gorfol

The number of contigs generated is significantly lower than expected

2

### Description of bug Hello, I recently ran metaviralSPAdes on a set of general environmental samples without targeted viral enrichment, and I noticed that the number of contigs generated is...

liusihang

Spades not showing any output after starting processing read Two

5

### Description of bug I am running spades to assemble the genome using short reads. At first, it appeared that everything was working fine. As it started processing read, it...

Shaileshdesai76