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ablab
SPAdes Genome Assembler
### Description of bug Hello, I am assembling UCEs for 12 goatfishes using Spades. I already did 11 species (without any major problem, except the memory limit) but I am...
### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. The input is RNASeq Illumina PE. Read1 aligns...
### Description of bug Hi, After running for 6 days my run finished abnormally with the message "error: unable to allocate OS memory". Please see the attached log files for...
### Description of bug I am trying to do the meta genome assembly through the SPAdes, but always ends up with error (after 3 days ). It is also taking...
### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. When the output corrected reads are compressed (so,...
### Description of bug Hi, I have a very beginner-question. I am using rnaSPAdes within the [transXpress](https://github.com/transXpress/transXpress) pipeline (written in snakemake) for de novo transcriptome assembly of 18 samples squenced...
### Description of bug i'm trying to run metaspades on my datasets however there is a problem. Could you please provide some insight into this? ### spades.log [spades (1).log](https://github.com/ablab/spades/files/12914763/spades.1.log) ###...
### Description of bug == Error == system call for: "['/home/zhuchenzhao/software/SPAdes-3.15.5-Linux/bin/spades-core', '/home/zhuchenzhao/dyy/hifi/D01/spades/K21/configs/config.info', '/home/zhuchenzhao/dyy/hifi/D01/spades/K21/configs/isolate_mode.info']" finished abnormally, OS return value: -11 ### spades.log == Error == system call for: "['/home/zhuchenzhao/software/SPAdes-3.15.5-Linux/bin/spades-core', '/home/zhuchenzhao/dyy/hifi/D01/spades/K21/configs/config.info', '/home/zhuchenzhao/dyy/hifi/D01/spades/K21/configs/isolate_mode.info']"...
### Description of bug ### Description of bug I used the assembly command: spades.py --pe1-1 B5.R1.trim.fq.gz --pe1-2 B5.R2.trim.fq.gz -t 96 -k 61, 71, 77, 81 -m 760 --careful --phred-offset 33...
### Description of bug It looks like spades is killing my run due to a memory allocation error. As per the uploaded log file, you can see I have allocated...
