spades
spades copied to clipboard
ablab
SPAdes Genome Assembler
### Description of bug I can't seem to figure out what the problem is. I am not sure what I should do about the no-saved checkpoints. The warning message reads...
### Description of bug Errors happend when I use spades in conda environment. == Error == exception caught: ======= SPAdes pipeline finished abnormally and WITH WARNINGS! === Pipeline warnings: *...
### Description of bug I used the assembly command: spades.py --pe1-1 B5.R1.trim.fq.gz --pe1-2 B5.R2.trim.fq.gz -t 96 -k 61, 71, 77, 81 -m 760 --careful --phred-offset 33 -o ../spades/B5 . This...
### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. You can specify the k-mers and other parameters...
### Description of bug I am using Spades for genome assembly of Illumina PE data and while it runs great to completion on each job I've done, I'm finding there...
influenza
### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. Hello, I'm currently using SPAdes for de novo...
### Description of bug Here's the command: ``` metaspades.py -o ../veba_output/assembly/LAM_Final_B5_1_sed_S5/intermediate/1__assembly --restart-from last --tmp-dir ../veba_output/assembly/LAM_Final_B5_1_sed_S5/tmp/assembly --threads 1 --memory 200 ``` Basically, we tried to pick up from a previous run...
### Description of bug In the documentation for SPAdes it is specifically stated that contigs formed by SPAdes will NOT contain 'N' characters, but I have a file generated by...
### Description of bug Hello spades team, In the case of metagenome assembly (meta mode), there are bacterial genomes that are very similar to each other, e.g., 90% to 95%...
### Description of bug Hi, im running an hybrid assembly with spades and everything goes well without failures until now, but in the spades-core script in the assembly step of...
