spades

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### Description of bug Two-steps repeat resolution (RR) is most memory-hungry for metagenome assembly, especially large-scale ones. I hope to learn pros and cons of RR, whether it is necessary...

yqy6611

spades-core terminated automatically during k-mer counting without errors

4

### Description of bug I tried to assemble metagenome reads via SPAdes (--meta), yet only the first k-mer can be assembled successfully without other manipulations. During the second k-mer assembly,...

yqy6611

RNASPades

1

### Description of bug spades-core: /spades/assembler/src/common/utils/kmer_mph/kmer_index_builder.hpp:297: size_t kmers::KMerDiskCounter::MergeKMers(const string&, const string&) [with Seq = RuntimeSeq; traits = kmer> == Error == system call for: "['/nfsdata/data/007_Softwares/SPAdes_3p15p4_Linux/bin/spades-core', '/nfsdata/new_project/denovo_RNASPAdes/out_combine_5-7> None ### spades.log [spades.log](https://github.com/ablab/spades/files/13898518/spades.log)...

JaykishanJ

Error during --test execution: The program was terminated by segmentation fault

5

### Description of bug I downloaded the binaries as suggested [here](https://github.com/ablab/spades#downloading-spades-linux-binaries). `spades.py` is in my $PATH. I was running the command `spades.py --test` and got the error: "The program was...

lucolotto

The program was terminated by segmentation fault

1

### Description of bug I was running Unicycler, and during the execution of SPADES, an error occurred, causing it to stop ### spades.log Command line: /data/home/larissa.brito/miniconda3/envs/uni/bin/spades.py -1 > System information:...

laribritto

Error:spades-hammer ,finished abnormally, OS return value: -9

2

### Description of bug I encountered an error when splicing the metagenome, this is the second time, is there a good Samaritan passing by to point me out? ### spades.log...

JianxiongZeng

finished abnormally, OS return value: -9

5

### Description of bug Hi support group, I am running into the issue OS return value:-9. And advice would be appreciated. Thanks, Yannan ### spades.log [spades.log](https://github.com/ablab/spades/files/13323412/spades.log) ### params.txt [params.txt](https://github.com/ablab/spades/files/13323413/params.txt) ###...

Yannan226

curl http://cab.spbu.ru/files/release3.15.5/SPAdes-3.15.5-Darwin.tar.gz -o SPAdes-3.15.5-Darwin.tar.gz doesnt work

1

### Description of bug they tehre, i was trying to install SPAdes on my mac machine but when i put in this command line curl http://cab.spbu.ru/files/release3.15.5/SPAdes-3.15.5-Darwin.tar.gz -o SPAdes-3.15.5-Darwin.tar.gz i download...

scholaraspect

problem running SPAdes error -11

11

### Description of bug Hi, When I try to run my assembly it gives me this error: == Error == system call for: "['/home/name/salmo/SPAdes-3.15.4-Linux/bin/spades-hammer', '/home/name/salmo/Spades_out_dir/ISZ-2_S5/corrected/configs/[config.info](http://config.info/)']" finished abnormally, OS return value:...

tmms345

Can rnaSPAdes count the numbers of genes and transcripts in the RNA-seq analysis like the TrinityStats.py script in Trinity software?

2

### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. Recently, I found that rnaSPAdes is superior in...

luwd401