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System call finished abnormally, OS return value: -9

Open sclipman opened this issue 1 year ago • 5 comments

Description of bug

Thank you for your work on this incredible software. I have enjoyed SPAdes for many years. I am hoping you can help me resolve an error I'm now receiving when trying to run SPAdes on an HPC cluster to assemble 150 bp metagenomic reads.

== Error == system call for: "['/home/sc/Resources/SPAdes-3.15.5-Linux/bin/spades-core', '/home/sc/XF1620/XF1620/K55/configs/config.info', '/home/sc/XF1620/XF1620/K55/configs/mda_mode.info', '/home/sc/XF1620/XF1620/K55/configs/meta_mode.info']" finished abnormally, OS return value: -9

Please find the log and parameter files attached below.

I appreciate any insight!

spades.log

spades.log

params.txt

params.txt

SPAdes version

SPAdes v3.15.5

Operating System

Linux-4.18.0-147.el8.x86_64-x86_64-with-centos-8.1.1911-Core

Python Version

Python v3.6.8

Method of SPAdes installation

Linux binary

No errors reported in spades.log

  • [X] Yes

sclipman avatar Dec 01 '22 02:12 sclipman