spades
spades copied to clipboard
error code: 12 [Cannot allocate memory] and OS return value: -6
Description of bug
Hi,
After running for 6 days my run finished abnormally with the message "error: unable to allocate OS memory". Please see the attached log files for the details. I know this question has been asked many times and it is possibly due to not getting enough memory. However, I am assigning 3TB of memory of RAM to the run, and at the end when it starts giving the error message, the memory usage is only "1087G / 1192G INFO ". I rerun the program two times after providing it with more memory but every time it failed. Could you please let me know the possible solution for this? I would appreciate any response to it.
Thank you,
spades.log
params.txt
SPAdes version
3.15.5
Operating System
centos-8.8-Green_Obsidian
Python Version
3.7.7
Method of SPAdes installation
binaries
No errors reported in spades.log
- [ ] Yes