MuSiC

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Music2 bug in "music2_prop_t_statistics" function

2

Error: ``` Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘exprs’ for signature ‘"matrix"’ ``` Raised from: https://github.com/xuranw/MuSiC/blame/0a3e3af45d4bd018939013660a3e83e580fa3bac/R/music2.R#L340 The actual code tries to...

ste-depo

Error in solve.default(t(D.weight) %*% D.weight) : system is computationally singular: reciprocal condition number = 1.20065e-19

3

Thanks for you powerful pachage. Here, when I followed the tutorial for Estimation of cell type proportions with pre-grouping of cell types, I met an error.  And I don't...

faeneeR

music_prop is not giving back all cell types

1

Hi, When I'm using music_prop it only gives back 7 out of the 8 cell types even when I increase the cell type number to 12 it only gives 7...

JoyOtten

MuSiC2 issue: Error in MOD0 + mod0 : non-conformable arrays

8

Running `music2_prop`, the following issue happens if 'select.ct' argument = NULL. It's allowed to be NULL in the original music_prop, and a NULL value means "use all cell types in...

jaclynbeck-sage

Error with installation: package ‘TOAST’ 1.8.3 was found, but >= 1.10.1 is required by ‘MuSiC’

3

Hi, I am having issues in R 4.1 with the installation; specifically errors with TOAST: See details below: >devtools::install_github('xuranw/MuSiC') Downloading GitHub repo xuranw/MuSiC@HEAD These packages have more recent versions available....

soueryw

How to handle TCGA RNAseq data?

2

If I want to analyze the RNAseq data of TCGA, which data should be used? count or tpm or fpkm?

apxmfrstmc

Error in validityMethod(as(object, superClass)) : object 'Csparse_validate' not found

3


BioinfoXP

Possible to merge multiple single cell datasets to create a reference compatible with MuSiC?

2

I'm curious if anyone knows how to appropriately merge multiple single cell datasets to create a reference dataset that's compatible with MuSiC? I'm trying to deconvolute a bulk RNA-seq dataset...

CaitlinGHowe

How to manage Multithreading？

2

Hello, when I run the MuSiC2, By default, all the threads of the server are occupied, how to limit the number of occupied resources?I could not find the relevant interface.

JingRanble

music_prop_toast needs a 'markers' argument

5

In the function `music_prop_toast`, it calls `music_prop` several times with argument `markers = markers`. However `markers` is never defined in the main `music_prop_toast` function and it isn't an input argument...

jaclynbeck-sage