MuSiC
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xuranw
Multi-subject Single Cell Deconvolution
If my bulk-RNA-seq data obtain from different time, does this matter?
I am running the tutorial for MuSiC for Benchmark evaluation. I followed all the steps without problems, and averything looks like is running properly, but the final step which is...
dear Dr.xuranw, I have studied your paper recently and I think It's a great tool to estimate cell proportions.But some questions puzzled me，I wonder if I can ask you? 1.When...
Dear xuranw, I am a new guy in bio-software, I want to make some modification on the source code of your MuSiC about calculation of cell infiltration to get simple...
Hi, Thanks for the package. Is there any minimum number of cell required per cell type in the single-cell dataset used? Best wishes Nurun
Hi, I have a question on cell type proportion estimates. I have a single cell RNA-seq reference data like the below toy example, Genes CD4 Mono Ery ACE 49 1...
Hello, Firstly, thanks for this analysis tool. So far I find it pretty intuitive to use & helpful. I stumbled across something I thought a bit odd, was hoping you...
Hi Xuran, Thank you very much for the MuSiC package you have provided, I have been working on it and have another question regarding finding the most influential genes in...
the code in function `music_prop`: ``` if(ct.cov){ Sigma.ct = sc.basis$Sigma.ct[, m.sc]; if(sum(Yjg[, i] == 0) > 0){ D1.temp = D1[Yjg[, i]!=0, ]; Yjg.temp = Yjg[Yjg[, i]!=0, i]; Sigma.ct.temp = Sigma.ct[,...
First of all, thank you for your wonderful work on data analysis. While I was skimming through your R codes, I found on function "music.iter.ct" on "analysis.R" file there was...
