MuSiC
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xuranw
Multi-subject Single Cell Deconvolution
When running the command music_prop for instance.. Est.prop.bulk.annot = music_prop(bulk.eset = bulk.eset, sc.eset = sc.eset, clusters = 'Inferred.cell.type', samples="barcode", select.ct = pheno.m$Inferred.cell.type, verbose = T) It is giving this error-...
Hi, I find this method really cool and promising but I am having issues trying to implement it to my data. Can you provide a vignette (or section of one)...
Hi, I understand MuSiC requires both sc and bulk data to estimate cell type proportions in the latter. I was wondering whether estimating cell type proportions _in single cell data_...
Hi, We realized that `bulk_construct()` starts misbehaving if your sc data contains >100 clusters. `bulk_construct()` uses `summary()` to calculate the number of cells per cluster, and `summary()` has a default...
Hi, the link to the vignette.Rmd [on the tutorial page](https://xuranw.github.io/MuSiC/articles/MuSiC.html) is broken. You may want to change it to https://github.com/xuranw/MuSiC/blob/master/vignettes/vignette.Rmd
Hi, I wonder what sampleID is in your analysis. Does it refer to the batches? In my sc data, I only have one batch (replica). So, I set the sampleID...
Hi this is just a quick one. I need to run ```library(biobase)``` in order to attach the function ```sampleNames()``` before running ```music_basis``` as the biobase package isn't attached/loaded in directly...
I'm trying to the run the music_prop command and have been getting the following error: Error in colMeans(S, na.rm = TRUE): 'x' must be an array of at least two...
Hi xuran, Thank you for your excellent work. I was wondering if MuSiC could be used for microarray data or not? And if the results of MuSiC could be compared...
Hello Xuran! Thanks for your great package! I've been able to run MuSiC cell type estimation analysis on my data of interes (brain). However, several cell types are very transcriptionally...
