snps topic
strataG
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Panseq
Pan-genomic sequence analysis
gwasTools
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
proxysnps
:bookmark: Get SNP proxies from the 1000 Genomes Project.
16GT
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
GeneticVariation.jl
Datastructures and algorithms for working with genetic variation
PopGen.jl
Population Genetics in Julia
gw
Genome browser and variant annotation
vargeno
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
SnpArrays.jl
Compressed storage for SNP data