single-cell topic
salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
scRNA-seq_notes
A list of scRNA-seq analysis tools
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
scgen
Single cell perturbation prediction
pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
dittoSeq
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
awesome-omics
A collection of awesome things regarding all omics.
scde
R package for analyzing single-cell RNA-seq data
wot
A software package for analyzing snapshots of developmental processes
iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects