Bader Lab, University of Toronto

Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not st...

BaderLab

Predicted cell-cell interactions of the aging mouse brain

BaderLab

A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in biomedical text-mining and information extraction.

BaderLab

Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods

BaderLab

collection of notebooks with different cytoscape workflows

BaderLab

STL-like containers (array, vector, matrix, cube) useable in device code.

BaderLab

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.

BaderLab

R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

BaderLab

Explore and share your scRNAseq clustering results

BaderLab

Scripts for processing single liver cells RNA-Seq 10X Genomics Data

BaderLab